The ABS module will only be an issue if you allow air into the system, at which point you may require dealer level tools to command a prime/purge of the module while introducing new fluid.
The key to flushing fluid is to never let the master cylinder get to the point where it sucks air. Open the bleeder valve, give it a pump or two while watching the fluid level at the master cylinder (being prepared to pour more in immediately if it goes down lower/faster than you expect), close bleeder valve, refill master cylinder, and then repeat until you're getting fresh fluid at the bottom end. Use a piece of latex or neoprene or latex hose on the nipple of the bleeder valve and keep it submerged in a small jar of brake fluid - this serves two purposes - it will let you visually see when the old fluid is completely flushed out, and it will also prevent any air from being sucked back into the master cylinder accidentally. I prefer the neoprene/latex hose to the cheap plastic stuff because it seals better on the bleeder nipple and it's also way more flexible (so less likely to flip out of the jar of fluid when you open and close the bleeder valve, but YMMV.
It's a pretty simple process and can be completed quickly, at least on the front brake - the rear may be a little more work depending on the location of the calliper(s).
Lastly, take note that brake fluid will ruin paint, so be sure to cover everything. The master cylinder will "burp" fluid back up when you release the brake handle with the bleeder closed, and with the cover off it will sometimes geyser if you release the brake too fast while under pressure...so be prepared.