Pulsing brakes had been common problem for me on my track bike, not so much on my street bike. I was using EBC HH pads on both bikes, still have them on the street bike and they work great. The problem at the track turned out to be pad transfer. The interface between the rotor and pad gets hot enough to transfer minute amounts of melted pad to the rotor. This would develop into a slip-stick pulsing under braking. There was no real pulsing at the lever.
Now at the beginning of each season I hone the rotors with a
Brush Flex-Hone mounted in a drill press and use full on race pads (DP) on the track.
My street bike is heavier but never sees the high speed high load braking the track bike does and I think I've only done those rotors once.