Let's be real clear about something right off the start.
EVERY crankshaft in EVERY motor is/was balanced BEFORE the engine was built/assembled.
If it wasn't balanced, the bearings wouldn't last 10mins.
Making changes to the top end has absolutely no effect on the operation of the crankshaft.
Harleys have cranks like small tractors anyways, so feel free to add all the horsepower you want.
As for max rpms, the only thing holding it back is the stock top end and cams.
The motor is quite happy and able to run at 9000rpms providing you have the correct heads, pistons, cams, ignition, rods etc..
Another myth is the belief that displacement is the only answer for speed and power.
If that were true, a small honda car engine wouldn't be able to make 300hp.
The larger displacement will give you more torque, thats what you are paying for, the HP gain is minimal.
An 883 with Buell lightning heads, pistons, new cams, ignition module and small carb mods will kill any 1200, 1250, and all stock softails Harley makes.
Take it a step further and custom port polish the heads, big twin valves, and have them shaved, you can spank most sportbikes down the quarter mile.
If you doubt any of the above, make sure you never bet your bike slip against me.