Damn, didn't realize anyone had replied. Ok so here is the full story...
I bought the bike 2 seasons ago and when I brought it home the first night by the morning the next day the battery had died. So the I went and bought a new battery and the next morning after that the battery was dead again so I brought it to cycle world and mark did a step by step check with. Multimeter on the wiring and said that it was the stator and he ordered a new one for me.
During the days I had to wait for the stator to come in I would switch batteries every morning and put the other one on charge so at least I could still use the bike. By the time the stator came in the problem had gone away so mark said just to leave it then since it wasn't 100% necessary to change it and would save me a few hundred bucks. He said these problems can sometimes work themselves out. I was ok with that so I didn't do anything.
So he's where things got messed up. I got in an accident last year and the bike fell on it's left side and I shattered my wrist. Once I replaced some fairings and little things I started riding it again except something wasn't right about it. The bike didn't have as much power as it did before the accident. So I brought it back to cycle world. They did a carb sync on the bike and it made it better but it didn't fix it... I brought it back for another carb sync and stuff nothing. The bike was misfiring on one of the cylinders, and sometimes when I would twist the throttle it would hesitate before revving. Sometimes the hesitation was bad. Now the spark plugs had been changed just before the accident but I figured there would be no harm in putting new plugs in so I did. Again, it improved but still misfiring, except it wasn't hesitating so much anymore. It wasn't until I unloaded my bike from my truck this past Aug at mosport that it severely hesitated again, but after a run on the track it was fine again.
So I have absolutely no idea what is wrong and why the bike is misfiring. My plan was to just replace the stator if there was a problem at some point and bring it to either riders choice or pro6 to get put on the dyno and see if they can figure out what is wrong with it. I figured I'd do the stator myself to save some money but any suggestions would be greatly appreciated.
Thanks
Matt