Hey Xray,
There are quite a few possibilities here. From my experience:
- Start with rear wheel alignment. Sounds simple but make sure the "dash count" on each side of the swing arm where the axle bolts in are aligned. Having it up on a stand watching the center of the rear tire. Don't use the center of the tail as your alignment point, the subframes can be slightly bent. A weight and a string if you really want to get technical.
- The front forks are easy to bend. For this you'll need a run-out gauge. The quick way is to test 3 or 4 runout points on each fork as you spin them. I have one if you want to use it, but its a bit of a drive for you. The ideal way is to actually take the forks apart. Not a hard job, but time consuming. If you are dropping in an ohlins kit, make sure the shop measures the forks first. Scott miller suggested 4-6/1000's of an inch was the max he'd allow before putting in a K-tech kit. Fortunately fork tubes are fairly plentiful for that bike now.
- The stock steering damper is completely inadequate on the bike. It needs to be replaced for a manual unit (hyperpro, ohlins, etc). I snapped the connecting tab (effectively no damper) with a hyper pro on it, the bike was outright scary without it at about 200 kph, coming on the back straight @ SMP I actually could only use 4th gear and half throttle.
- The original rear shock is also not up to the task of track duty at all. I believe they went to the floating rear shock in 2012. Consider talking to John Sharrard about the install/setup for suspension.
- I never had issues with the head bearings, after 70,000km they still perform like brand new. Don't forget to clean/grease the needle bearings in the swing arm.