I think the different chain pitch would affect it ever so slightly, but Im not sure if actually would at all, and if it did would it even be measurable. I have seen some gearing change calculators online that ask for chain pitch as well as tire size changes
Even a stock bike has a certain amount of inaccuracy, I can even be different % from bike to bike of the same model and year. Just like HP output can vary due to manufacturing tolerance range ..
Point is you can get it close, but you will never get it exact because as your tire wears it changes....So youve got to accept the fact there will always be a certain amount of inaccuracy