03 R1 - Error 1

Banger

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I replaced my stator a month ago and for the first while it was running fine. Now it seems to lurch every couple kms and my tach will drop. Yesterday I stopped for a train and as I rolled through the tracks, the bike just cut out and died. It started up again no problem but showed me err-1 on my display. When I look this up it says it's an ECU issue. Could this be because of a bad fix from the stator or something entirely new?
 
This is what I got from my FJR1300 owners board for error 1

Found a reference to Er-1.
Page 481 of manual (chapter 7-30)
Open or short circuit in communication line.
No signals received from ECU.

Pretty sure it may be the same for the R1, cant see Yamaha reinventing the wheel.
 
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